Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1417095	1417219	125	2 [1]	[1] 2	gsiD_3	Glutathione transport system permease protein GsiD

AAGCTTTAGCAATCAAACTTTTTCCAGCGCCGCTCTCTCCAATCAAGGCATTAATCTGTTGACTAAAAATTTTCAAATCAATCCCTTTAATAAGAGATTTCTCACTAGTATTCTTTATTGTTAAATTTTGTATATCAATGAGACTCATCATATTCACCCCGTTGTTTCAGCAATCTATCTCTTAGTGCA  >  USA300TCH1516_ALE/1416954‑1417142                                                                                                                                             |                                                 aaGCTTTAGCAATCAAACTTTTTCCAGCGCCGCTCTCTCCAATCAAGGCATTAATCTGTTGACTAAAAATTTTCAAATCAATCCCTTTAATAAGAGATTTCTCACTAGTATTCTTTATTGTTAAATTTTGTATATCAATga                                                  <  2:61314/141‑1 (MQ=255)                                                 cATTAATCTGTTGACTAAAAATTTTCAAATCAATCCCTTTAATAAGAGATTTCTCACTAGTATTCTTTATTGTTAAATTTTGTATATCAATGAGACTCATCATATTCACCCCGTTGTTTCAGCAATCTATCTCTTAGTGCa  >  2:10368/1‑141 (MQ=255)                                                                                                                                             |                                                 AAGCTTTAGCAATCAAACTTTTTCCAGCGCCGCTCTCTCCAATCAAGGCATTAATCTGTTGACTAAAAATTTTCAAATCAATCCCTTTAATAAGAGATTTCTCACTAGTATTCTTTATTGTTAAATTTTGTATATCAATGAGACTCATCATATTCACCCCGTTGTTTCAGCAATCTATCTCTTAGTGCA  >  USA300TCH1516_ALE/1416954‑1417142

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑