Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1417095	1417219	125	2 [1]	[1] 2	gsiD_3	Glutathione transport system permease protein GsiD

ATAGTTATAGCAATGACTGAAGCAGGTGCAATCAACATAATTGGATGAGACGAAATAAAATCACGACCTTGTTGCAACATAGCGCCCCACTCTGGTGTTGGCGGTTGTGCACCTAACCCAATAAATGATAGTGAACTTATATATAGAATGATTTTACCGAAATCAACGACCATCAAAACGATAATAGCCGGTAT  >  USA300TCH1516_ALE/1417167‑1417360                                                      |                                                                                                                                             aTAGTTATAGCAATGACTGAAGCAGGTGCAATCAACATAATTGGATGAGACGAAATAAAATCACGACCTTGTTGCAACATAGCGCCCCACTCTGGTGTTGGCGGTTGTGCACCTAACCCAATAAATGATAGTGAACTtata                                                       >  2:42928/1‑141 (MQ=255)                                                      aaTAAAATCACGACCTTGTTGCAACATAGCGCCCCACTCTGGTGTTGGCGGTTGTGCACCTAACCCAATAAATGATAGTGAACTTATATATAGAATGATTTTACCGAAATCAACGACCATCAAAACGATAATAGCCGGtat  >  1:5329/1‑141 (MQ=255)                                                      |                                                                                                                                             ATAGTTATAGCAATGACTGAAGCAGGTGCAATCAACATAATTGGATGAGACGAAATAAAATCACGACCTTGTTGCAACATAGCGCCCCACTCTGGTGTTGGCGGTTGTGCACCTAACCCAATAAATGATAGTGAACTTATATATAGAATGATTTTACCGAAATCAACGACCATCAAAACGATAATAGCCGGTAT  >  USA300TCH1516_ALE/1417167‑1417360

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑