Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1422339	1422505	167	2 [1]	[1] 2	[phoU]–[pstB3]	[phoU],[pstB3]

TAACTGTTTGTCGTGCAAAGCCTCTATCGTCAATACTTAATGATTTTATACCATTTTCAATACTCACATAGACATTTGCACCTAACCGACGTAATTCTTTTATTAAATCATCAAGTTGCTCCTGATATCGTTGTCTAATTATTGCCATTATATATCAACCAAAC  >  USA300TCH1516_ALE/1422198‑1422361                                                                                                                                             |                        tAACTGTTTTTCGTGCAAAGCCTCTATCGTCAATACTTAATGATTTTATACCATTTTCAATACTCACATAGACATTTGCACCTAACCGACGTAATTCTTTTATTAAATCATCAAGTTGCTCCTGATATCGTTGTCTAatta                         <  2:59612/141‑1 (MQ=255)                        ctATCGTCAATACTTAATGATTTTATACCATTTTCAATACTCACATAGACATTTGCACCTAACCGACGTAATTCTTTTATTAAATCATCAAGTTGCTCCTGATATCGTTGTCTAATTATTGCCATTATATATCAACCAAAc  <  2:49471/141‑1 (MQ=255)                                                                                                                                             |                        TAACTGTTTGTCGTGCAAAGCCTCTATCGTCAATACTTAATGATTTTATACCATTTTCAATACTCACATAGACATTTGCACCTAACCGACGTAATTCTTTTATTAAATCATCAAGTTGCTCCTGATATCGTTGTCTAATTATTGCCATTATATATCAACCAAAC  >  USA300TCH1516_ALE/1422198‑1422361

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑