Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1422339	1422505	167	2 [1]	[1] 2	[phoU]–[pstB3]	[phoU],[pstB3]

GCTGCTTGTTGCATATTATGTGTAACCATAATAATTGTATACTTTTCTTTTAGTTCTTGAACCAACTCTTCTACTCTTAATGTTGAGATTGGATCTAATGCTGATGTCGGTTCATCCATTAAAATGACTTCAGGTTCAATTGCTAAACAACGCGCGATACAAACACGT  >  USA300TCH1516_ALE/1422479‑1422646                            |                                                                                                                                             gctgctTGTTGCATATTATGTGTAACCATAATAATTGTATACTTTTCTTTTAGTTCTTGAACCAACTCTTCTACTCTTAATGTTGAGATTGGATCTAATGCTGATGTCGGTTCATCCATTAAAATGACTTCAGGTTCAAtt                             >  1:46464/1‑141 (MQ=255)                            ataataATTGTATACTTTTCTTTTAGTTCTTGAACCAACTCTTCTACTCTTAATGTTGAGATTGGATCTAATGCTGATGTCGGTTCATCCATTAAAATGACTTCAGGTTCAATTGCTAAACAACGCGCGATACAAACACgt  >  1:47425/1‑141 (MQ=255)                            |                                                                                                                                             GCTGCTTGTTGCATATTATGTGTAACCATAATAATTGTATACTTTTCTTTTAGTTCTTGAACCAACTCTTCTACTCTTAATGTTGAGATTGGATCTAATGCTGATGTCGGTTCATCCATTAAAATGACTTCAGGTTCAATTGCTAAACAACGCGCGATACAAACACGT  >  USA300TCH1516_ALE/1422479‑1422646

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑