Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1516518	1516603	86	2 [1]	[1] 3	gpsB	Cell cycle protein GpsB

TACCCAAAATATCACTTTTAAAATTATAACATAGTCATTATTAGTAAGACAGTTAAACTTTTGTATTTAGTAATTATTTACCAAATACAGCTTTTTCTAAGTTTGAAATACGTTTTAAAATATCTACATTATTTGAAGATGTATTTGTTGTTGTATTATTCGAAGAAAAACTTTTATTGTCCTGAGGTCTTGATGTTGCTACACGTAGTCTTAATTCT  >  USA300TCH1516_ALE/1516377‑1516594                                                                                                                                             |                                                                              tACCCAAAATATCACTTTTAAAATTATAACATAGTCATTATTAGTAAGACAGTTAAACTTTTGTATTTAGTAATTATTTACCAAATACAGCTTTTTCTAAGTTTGAAATACGTTTTAAAATATCTACATTATTTGAAGATg                                                                               >  2:42286/1‑141 (MQ=255)                                                                              ttACCAAATACAGCTTTTTCTAAGTTTGAAATACGTTTTAAAATATCTACATTATTTGAAGATGTATTTGTTGTTGTATTATTCGAAGAAAAACTTTTATTGTCCTGAGGTCTTGATGTTGCTACACGTAGTCTTAAttct  >  1:25320/1‑141 (MQ=255)                                                                                                                                             |                                                                              TACCCAAAATATCACTTTTAAAATTATAACATAGTCATTATTAGTAAGACAGTTAAACTTTTGTATTTAGTAATTATTTACCAAATACAGCTTTTTCTAAGTTTGAAATACGTTTTAAAATATCTACATTATTTGAAGATGTATTTGTTGTTGTATTATTCGAAGAAAAACTTTTATTGTCCTGAGGTCTTGATGTTGCTACACGTAGTCTTAATTCT  >  USA300TCH1516_ALE/1516377‑1516594

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑