Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1516518	1516603	86	2 [1]	[1] 3	gpsB	Cell cycle protein GpsB

TTTTTTAAGTTTATGATTCTCTTCTGATAATTTTACAACTTCATTATTCATATCGGCCATTTTTTGATAATCAGCAATAATGTCATCTAAAAATGCATCTACTTCTTCTCTTCTATAGCCACGAGCCATCGTTTTTTCAAAA  >  USA300TCH1516_ALE/1516603‑1516744  |                                                                                                                                             ttttttAAGTTTATGATTCTCTTCTGATAATTTTACAACTTCATTATTCATATCGGCCATTTTTTGATAATCAGCAATAATGTCATCTAAAAATGCATCTACTTCTTCTCTTCTATAGCCACGAGCCATCGTTTTTTCaaa   <  1:42286/141‑1 (MQ=255)  tttttAAGTTTATGATTCTCTTCTGATAATTTTACAACTTCATTATTCATATCGGCCATTTTTTTATAATCAGCAATAATGTCATCTAAAAATGCATCTACTTCTTCTCTTCTATAGCCACGAGCCATCGTTTTTTCaaaa  >  2:1984/1‑141 (MQ=255)  tttttAAGTTTATGATTCTCTTCTGATAATTTTACAACTTCATTATTCATATCGGCCATTTTTTGATAATCAGCAATAATGTCATCTAAAAATGCATCTACTTCTTCTCTTCTATAGCCACGAGCCATCGTTTTTTCaaaa  >  1:35450/1‑141 (MQ=255)  |                                                                                                                                             TTTTTTAAGTTTATGATTCTCTTCTGATAATTTTACAACTTCATTATTCATATCGGCCATTTTTTGATAATCAGCAATAATGTCATCTAAAAATGCATCTACTTCTTCTCTTCTATAGCCACGAGCCATCGTTTTTTCAAAA  >  USA300TCH1516_ALE/1516603‑1516744

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑