Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1534060	1534071	12	2 [0]	[1] 3	USA300HOU_RS07480	hypothetical protein

TAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATTCAATAAAACTTTCTTTAATTTGATTGA  >  USA300TCH1516_ALE/1533919‑1534059                                                                                                                                             | tAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATTCAATAAAACTTTCTTTAATttgattga  >  1:26825/1‑141 (MQ=255) tAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATTCAATAAAACTTTCTTTAATttgattga  >  1:26837/1‑141 (MQ=255)                                                                                                                                             | TAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATTCAATAAAACTTTCTTTAATTTGATTGA  >  USA300TCH1516_ALE/1533919‑1534059

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑