Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1534060	1534071	12	2 [0]	[1] 3	USA300HOU_RS07480	hypothetical protein

TCTCTGACATCAAATACCCCATTTTAAGATTGCAATCTTGATAATTCGTCATGCCAATTTTCGTTACTTGGCTCTAGTTCCAACAATTGATTTAAAATAGTAATTGCTTGTTCCTTTTGACCAATTTCAATTAAATAGAAATAATAATCA  >  USA300TCH1516_ALE/1534063‑1534212          |                                                                                                                                             tctcTGACATCAAATACCCCATTTTAAGATTGCAATCTGGATAATTCGTCATGCCAATTTTCGTTACTTGGCTCTAGTTCCAACAATTGATTTAAAATAGTAATTGCTTGTTCCTTTTGACCAATTTCAATTAAATAGaaa           >  1:34396/1‑141 (MQ=255)          tCAAATACCCCATTTTAAGATTGCAATCTTGATAATTCGTCATGCCAATTTTCGTTACTTGGCTCTAGTTCCAACAATTGATTTAAAATAGTAATTGCTTGTTCCTTTTGACCAATTTCAATTAAATAGAAATAATAATCa  <  2:26825/141‑1 (MQ=255)          tCAAATACCCCATTTTAAGATTGCAATCTTGATAATTCGTCATGCCAATTTTCGTTACTTGGCTCTAGTTCCAACAATTGATTTAAAATAGTAATTGCTTGTTCCTTTTGACCAATTTCAATTAAATAGAAATAATAATCa  <  2:26837/141‑1 (MQ=255)          |                                                                                                                                             TCTCTGACATCAAATACCCCATTTTAAGATTGCAATCTTGATAATTCGTCATGCCAATTTTCGTTACTTGGCTCTAGTTCCAACAATTGATTTAAAATAGTAATTGCTTGTTCCTTTTGACCAATTTCAATTAAATAGAAATAATAATCA  >  USA300TCH1516_ALE/1534063‑1534212

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑