Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1564073	1564136	64	2 [0]	[1] 2	USA300HOU_RS07660	hypothetical protein

ACTTCTTTAATTGGCGCTTGCCCTGTTGCTTTTCTATATTTACTTTCAGCTTTATATTTCTTTAATTTTTGATTCGCCCATTTCCCTTCTTGAGATGTTGGATTATCTTTATATGTAGTATATAAAGCAACAACTGTTAAG  >  USA300TCH1516_ALE/1563932‑1564072                                                                                                                                             | aCTTCTTTAATTGGCGCTTGCCCTGTTGCTTTTCTATATTTACTTTCAGCTTTATATTTCTTTAATTTTTGATTCGCCCATTTCCCTTCTTGAGATGTTGGATTATCTTTATATGTAGTATATAAAGCAACAACTGTTAAg  <  1:29948/141‑1 (MQ=255) aCTTCTTTAATTGGCGCTTGCCCTGTTGCTTTTCTATATTTACTTTCAGCTTTATATTTCTTTAATTTTTGATTCGCCCATTTCCCTTCTTGAGATGTTGGATTATCTTTATATGTAGTATATAAAGCAACAACTGTTAAg  <  1:29949/141‑1 (MQ=255)                                                                                                                                             | ACTTCTTTAATTGGCGCTTGCCCTGTTGCTTTTCTATATTTACTTTCAGCTTTATATTTCTTTAATTTTTGATTCGCCCATTTCCCTTCTTGAGATGTTGGATTATCTTTATATGTAGTATATAAAGCAACAACTGTTAAG  >  USA300TCH1516_ALE/1563932‑1564072

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑