Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1564073	1564136	64	2 [0]	[1] 2	USA300HOU_RS07660	hypothetical protein

TTTCTTCATCTACTGGTATCGGACTTATACCTTTATTCGCTAAGAATTGATTTACTAATGCTAAGATCAATACGATGTATCTTGTTATTACTTTTGCATCCATTTGTTTGCTCCTTTTATCCAAAATAAAAAGCCAGTGCCGAAGCACTGACTCTTAAATATTACTTACACTTACCAAACCAGAAACAC  >  USA300TCH1516_ALE/1564089‑1564277                                                 |                                                                                                                                             tttCTTCATCTACTGGTATCGGACTTATACCTTTATTCGCTAAGAATTGATTTACTAATGCTAAGATCAATACGATGTATCTTGTTATTACTTTTGCATCCATTTGTTTGCTCCTTTTATCCAAAATAAAAAGCCAGTGcc                                                  >  1:3936/1‑141 (MQ=255)                                                 gATTTACTAATGCTAAGATCAATACGATGTATCTTGTTATTACTTTTGCATCCATTTGTTTGCTCCTTTTATCCAAAATAAAAAGCCAGTGCCGAAGCACTGACTCTTAAATATTACTTACACTTACCAAACCAGAAacac  >  1:45573/1‑141 (MQ=255)                                                 |                                                                                                                                             TTTCTTCATCTACTGGTATCGGACTTATACCTTTATTCGCTAAGAATTGATTTACTAATGCTAAGATCAATACGATGTATCTTGTTATTACTTTTGCATCCATTTGTTTGCTCCTTTTATCCAAAATAAAAAGCCAGTGCCGAAGCACTGACTCTTAAATATTACTTACACTTACCAAACCAGAAACAC  >  USA300TCH1516_ALE/1564089‑1564277

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑