Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1573790	1573830	41	2 [1]	[1] 2	USA300HOU_RS07705	Glycyl‑glycine endopeptidase ALE‑1

TTGTCGATTTAACAGATTGCCAAGCTTTTCCAAACCATTTACCAGTACTATTAGCTATAGCCTTAGTGTGGTATCCTACAGAACTTTTGGCTGAGCTCCAACCTGAACTTAATTTGCTTGGAATCCCTTTGATTCCGCTCCACATTTTTTTCATTTCGCCGCCAAAATG  >  USA300TCH1516_ALE/1573649‑1573817                                                                                                                                             |                             ttgtCGATTTAACAGATTGCCAAGCTTTTCCAAACCATTTACCAGTACTATTAGCTATAGCCTTAGTGTGGTATCCTACAGAACTTTTGGCTGAGCTCCAACCTGAACTTAATTTGCTTGGAATCCCTTTGATTCCGCTcc                              <  1:27990/141‑1 (MQ=255)                             tCCAAACCATTTACCAGTACTATTAGCTATAGCCTTAGTGTGGTATCCTACAGAACTTTTGGCTGAGCTCCAACCTGAACTTAATTTGCTTGGAATCCCTTTGATTCCGCTCCACATTTTTTTCATTTCGCCGCCAAAATg  >  1:25511/1‑141 (MQ=255)                                                                                                                                             |                             TTGTCGATTTAACAGATTGCCAAGCTTTTCCAAACCATTTACCAGTACTATTAGCTATAGCCTTAGTGTGGTATCCTACAGAACTTTTGGCTGAGCTCCAACCTGAACTTAATTTGCTTGGAATCCCTTTGATTCCGCTCCACATTTTTTTCATTTCGCCGCCAAAATG  >  USA300TCH1516_ALE/1573649‑1573817

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑