Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1573790	1573830	41	2 [1]	[1] 2	USA300HOU_RS07705	Glycyl‑glycine endopeptidase ALE‑1

CTGCCCATTTTACTAAAGGCTTCGCCAGTTTTACTTTTTACGCCGTCCCAAGCATTTCCAAACCATTTCTTTATATTTTCTCTGTTTCTACGAGCTGTTTCTTCTTGTTCTTTAGCGTATTTATCGCTTTTTTTCTTTTGGTCT  >  USA300TCH1516_ALE/1573828‑1573971    |                                                                                                                                             cTGCCCATTTTACTAAAGGCTTCGCCAGTTTTACTTTTTACGCCGTCCCAAGCATTTCCAAACCATTTCTTTATATTTTCTCTGTTTCTACGAGCTGTTTCTTCTTGTTCTTTAGCGTATTTATCGCTTTTTTTCTTTTgg     <  1:31060/141‑1 (MQ=255)    cccATTTTACTAAAGGCTTCGCCAGTTTTACTTTTTACGCCGTCCCAAGCATTTCCAAACCATTTCTTTATATTTTCTCTGTTTCTACGAGCTGTTTCTTCTTGTTCTTTAGCGTATTTATCGCTTTTTTTCTTTTGGtct  >  1:10443/1‑141 (MQ=255)    |                                                                                                                                             CTGCCCATTTTACTAAAGGCTTCGCCAGTTTTACTTTTTACGCCGTCCCAAGCATTTCCAAACCATTTCTTTATATTTTCTCTGTTTCTACGAGCTGTTTCTTCTTGTTCTTTAGCGTATTTATCGCTTTTTTTCTTTTGGTCT  >  USA300TCH1516_ALE/1573828‑1573971

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑