Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1608841	1609091	251	2 [1]	[1] 2	[USA300HOU_RS07970]	[USA300HOU_RS07970]

AATCGCATTTTTTTCTGCAGGCGGTTGAAAGCCTTGGCCTACATATTTTGAAGCTTCCATTTCTTCTGGTACAGATTTTGTTTCTGTTTTTGTGTCTTTTTTTGATTCATTTTCCATCGTGGAACATCCCCCTAAAATTAATGTCGTAGCTAAAACTGATCCAATGAATTTTTTCATATGACACCTCGAATAATTTAATTAATACAATATATCTATATTTTACCCTATTTTTATAATCAAAT  >  USA300TCH1516_ALE/1608700‑1608941                                                                                                                                             |                                                                                                      aaTCGCATTTTTTTCTGCAGGCGGTTGAAAGCCTTGGCCTACATATTTTGAAGCTTCCATTTCTTCTGGTACAGATTTTGTTTCTGTTTTTGTGTCTTTTTTTGATTCATTTTCCATCGTGGAACATCCCCCTAAAATTaa                                                                                                       <  1:19002/141‑1 (MQ=255)                                                                                                      ttGATTCATTTTCCATCGTGGAACATCCCCCTAAAATTAATGTCGTAGCTAAAACTGATCCAATGAATTTTTTCATATGACACCTCGAATAATTTAATTAATACAATATATCTATATTTTACCCTATTTTTATAATCaaat  >  2:54212/1‑141 (MQ=255)                                                                                                                                             |                                                                                                      AATCGCATTTTTTTCTGCAGGCGGTTGAAAGCCTTGGCCTACATATTTTGAAGCTTCCATTTCTTCTGGTACAGATTTTGTTTCTGTTTTTGTGTCTTTTTTTGATTCATTTTCCATCGTGGAACATCCCCCTAAAATTAATGTCGTAGCTAAAACTGATCCAATGAATTTTTTCATATGACACCTCGAATAATTTAATTAATACAATATATCTATATTTTACCCTATTTTTATAATCAAAT  >  USA300TCH1516_ALE/1608700‑1608941

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑