Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ USA300TCH1516_ALE 1608841 1609091 251 2 [1] [1] 2 [USA300HOU_RS07970] [USA300HOU_RS07970]

TATATTTAATAGTTGATATTCGCAAAAACCCTAAGTTCTAATCCACATACAAAATTCCCCACATCAATCAAAAAACGCATGCTATAAATTAGAGTCTCTAATCAATAACATGCGTTCTGAAATAACTATATTCAATTTTATTCTGGTTTTGGTAGTTTAATAATAAATGTTGTGCCTTTCCCTAATTCGCTTTTAACATCTATGGAACCACCATGCTCTTCGATAATCATTTTACAAATGAACAAACCT  >  USA300TCH1516_ALE/1608984‑1609232
                                                                                                            |                                                                                                                                            
tatatTTAATAGTTGATATTCGCAAAAACCCTAAGTTCTAATCCACATACAAAATTCCCCACATCAATCAAAAAACGCATGCTATAAATTAGAGTCTCTAATCAATAACATGCGTTCTGAAATAACTATATTCAATTTTAt                                                                                                              <  1:54212/141‑1 (MQ=255)
                                                                                                            cATGCGTTCTGAAATAACTATATTCAATTTTATTCTGGTTTTGGTAGTTTAATAATAAATGTTGTGCCTTTCCCTAATTCGCTTTTAACATCTATGGAACCACCATGCTCTTCGATAATCATTTTACAAATGAACAAACCt  >  1:25256/1‑141 (MQ=255)
                                                                                                            |                                                                                                                                            
TATATTTAATAGTTGATATTCGCAAAAACCCTAAGTTCTAATCCACATACAAAATTCCCCACATCAATCAAAAAACGCATGCTATAAATTAGAGTCTCTAATCAATAACATGCGTTCTGAAATAACTATATTCAATTTTATTCTGGTTTTGGTAGTTTAATAATAAATGTTGTGCCTTTCCCTAATTCGCTTTTAACATCTATGGAACCACCATGCTCTTCGATAATCATTTTACAAATGAACAAACCT  >  USA300TCH1516_ALE/1608984‑1609232

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: