Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1614455	1614491	37	2 [0]	[1] 2	xerD_3	Tyrosine recombinase XerD

AAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGGT  >  USA300TCH1516_ALE/1614319‑1614454                                                                                                                                        | aaaaGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGgt  <  1:58308/136‑1 (MQ=255) aaaaGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGgt  >  2:58308/1‑136 (MQ=255)                                                                                                                                        | AAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGGT  >  USA300TCH1516_ALE/1614319‑1614454

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑