Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1614455	1614491	37	2 [0]	[1] 2	xerD_3	Tyrosine recombinase XerD

GCACTGCTCTTAAATCTGCGCCATTTTCCAATAAATGTGTCGCAAAAGAGTGGCGTAACGTATGTGGCGTTAACGTCTTTTTAATGTTTGCCTTTACACCATTTTGTTTAATCATTTTCCATATTGCTTGTCGTGATAAAGGTTTA  >  USA300TCH1516_ALE/1614487‑1614632      |                                                                                                                                             gCACTGCTCTTAAATCTGCGCCATTTTCCAATAAATGTGTCGCAAAAGAGTGGCGTAACGTATGTGGCGTTAACGTCTTTTTAATGTTTGCCTTTACACCATTTTGTTTAATCATTTTCCATATTGCTTGTCGTGATAAAg       >  1:1414/1‑141 (MQ=255)      gCTCTTAAATCTGCGCCATTTTCCAATAAATGTGTCGGAAAAGAGTGGCGTACCGTATGTGGCGTTAACGTCTTTTTAATGTTTGCGTTTACACCATCTTGTTTAATCATTTTCCATATTGCTTGTCGTGATAAAGGTTTa  <  2:47596/141‑1 (MQ=255)      |                                                                                                                                             GCACTGCTCTTAAATCTGCGCCATTTTCCAATAAATGTGTCGCAAAAGAGTGGCGTAACGTATGTGGCGTTAACGTCTTTTTAATGTTTGCCTTTACACCATTTTGTTTAATCATTTTCCATATTGCTTGTCGTGATAAAGGTTTA  >  USA300TCH1516_ALE/1614487‑1614632

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑