Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1627440	1627485	46	2 [1]	[1] 2	gnd	6‑phosphogluconate dehydrogenase, decarboxylating

AGTAAGGATCTAGCAATAAGTTTTGTAATCCTGGATTATTATCGTAAGCATCTTTGATCTTTTGTAAGAATTGTGCACGGATAATGCAACCTTCTCTCCAAATCATAGCTAAATCACCAAGTTTTAAATTCCATTCATTATCTTCACTTGCTTTACGCATTTGCGCGAAACCTTGT  >  USA300TCH1516_ALE/1627299‑1627474                                                                                                                                             |                                    aGTAAGGAGCTAGCAATAAGTTTTGTAATCCTGGATTATTATCGTAAGCATCTTTGATCTTTTGTAAGAATTGTGCACGGATAATGCAACCTTCTCTCCAAATNAGANCTAANTCACCAAGTNNTAAATTCCATTCATTAt                                     <  1:55830/141‑1 (MQ=255)                                    ttattaTCGTAAGCATCTTTGATCTTTTGTAAGAATTGTGCACGGATAATGCAACCTTCTCTCCAAATCATAGCTAAATCACCAAGTTTTAAATTCCATTCATTATCTTCACTTGCTTTACGCATTTGCGCGAAACCTtgt  <  2:39802/141‑1 (MQ=255)                                                                                                                                             |                                    AGTAAGGATCTAGCAATAAGTTTTGTAATCCTGGATTATTATCGTAAGCATCTTTGATCTTTTGTAAGAATTGTGCACGGATAATGCAACCTTCTCTCCAAATCATAGCTAAATCACCAAGTTTTAAATTCCATTCATTATCTTCACTTGCTTTACGCATTTGCGCGAAACCTTGT  >  USA300TCH1516_ALE/1627299‑1627474

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑