Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1731081	1731145	65	2 [1]	[1] 2	iscS_1	Cysteine desulfurase IscS

CAAGATGTCCAATTGCTTGAACCGCATCAACATGGAAATATGCATTTGTCTCAGCAATAATATCTTGAATATCATAAATTTGTTGCACTGTGCCAACTTCATTATTTACAAACATAATAGATACTAAAATCGTCTTATCTGTAATTGTTTCTTCAAGTTGATCTAAATCAA  >  USA300TCH1516_ALE/1730940‑1731110                                                                                                                                             |                               cAAGATGTCCAATTGCTTGAACCGCATCAACATGGAAATATGCATTTGTCTCAGCAATAATATCTTGAATATCATAAATTTGTTGCACTGTGCCAACTTCATTATTTACAAACATAATAGATACTAAAATCGTCTTATCTg                                <  1:64899/141‑1 (MQ=255)                               cATGGAAATATGCATTTGTCTCAGCAATAATATCTTGAATATCATAAATTTGTTGCACTGTGCCAACTTCATTATTTACAAACATAATAGATACTAAAATCGTCTTATCTGTAATTGTTTCTTCAAGTTGATCTAAATCaa  <  1:44453/141‑1 (MQ=255)                                                                                                                                             |                               CAAGATGTCCAATTGCTTGAACCGCATCAACATGGAAATATGCATTTGTCTCAGCAATAATATCTTGAATATCATAAATTTGTTGCACTGTGCCAACTTCATTATTTACAAACATAATAGATACTAAAATCGTCTTATCTGTAATTGTTTCTTCAAGTTGATCTAAATCAA  >  USA300TCH1516_ALE/1730940‑1731110

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑