Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1731081	1731145	65	2 [1]	[1] 2	iscS_1	Cysteine desulfurase IscS

TGTTACATCAAAACCTTCTCGCTCTAATTGTTCAAAAACATGTAACACAGAATGATGTTCAATCTTCGATGTGATAATGTGATTACCCAATTGTTCATTTGCTTTTACTATGCCTTTAATTGCCGTATTATTCGATTCTGTTGCGCCA  >  USA300TCH1516_ALE/1731139‑1731286        |                                                                                                                                             tGTTACATCAAAACCTTCTCGCTCTAATTGTTCAAAAACATGTAACACAGAATGATGTTCAATCTTCGATGTGATAATGTGATTACCCAATTGTTCATTTGCTTTTACTATGCCTTTAATTGCCGTATTATTCGATTCTGt         >  1:32196/1‑141 (MQ=255)        tCAAAACCTTCTCGCTCTAATTGTTCAAAAACATGTAACACAGAATGATGTTCAATCTTCGATGTGATAATGTGATTACCCAATTGTTCATTTGCTTTTACTATGCCTTTAATTGCCGTATTATTCGATTCTGTTGCGCCa  <  2:22346/141‑1 (MQ=255)        |                                                                                                                                             TGTTACATCAAAACCTTCTCGCTCTAATTGTTCAAAAACATGTAACACAGAATGATGTTCAATCTTCGATGTGATAATGTGATTACCCAATTGTTCATTTGCTTTTACTATGCCTTTAATTGCCGTATTATTCGATTCTGTTGCGCCA  >  USA300TCH1516_ALE/1731139‑1731286

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑