Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1742463	1742538	76	2 [1]	[0] 2	relA	GTP pyrophosphokinase

AATTTTCAACCAATCACGACTTGGTCCATATGAATGTTTACTAGTACGTATTTCAACAATATCGCCTGTTTGTAAAATATAGTCAATTGGTACAATTTTGCCATTCACCTTGGCACCAATCATCTTATTACCTACTTCACTGTGAATCGCATAAGCAAAATCAATCGGCACAGCACCATATGGCAACTCAATAA  >  USA300TCH1516_ALE/1742322‑1742515                                                                                                                                             |                                                      aaTTTTCAACCAATCACGACTTGGTCCATATGAATGTTTACTAGTACGTATTTCAACAATATCGCCTGTTTGTAAAATATAGTCAATTGGTACAATTTTGCCATTCACCTTGGCACCAATCATCTTATTACCTACTTCACt                                                       >  2:47916/1‑141 (MQ=255)                                                      caacaaTATCGCCTGTTTGTAAAATATAGTCAATTGGTACAATTTTGCCATTCACCTTGGCACCAATCATCTTATTACCTACTTCACTGTGAATCGCATAAGCAAAATCAATCGGCACAGCACCATATGGCAACTCAATaa  <  1:47916/141‑1 (MQ=255)                                                                                                                                             |                                                      AATTTTCAACCAATCACGACTTGGTCCATATGAATGTTTACTAGTACGTATTTCAACAATATCGCCTGTTTGTAAAATATAGTCAATTGGTACAATTTTGCCATTCACCTTGGCACCAATCATCTTATTACCTACTTCACTGTGAATCGCATAAGCAAAATCAATCGGCACAGCACCATATGGCAACTCAATAA  >  USA300TCH1516_ALE/1742322‑1742515

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑