Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1742463	1742538	76	2 [1]	[0] 2	relA	GTP pyrophosphokinase

TATACTTTGTCACTCTGTAAGTCATATTTTAAGGTTTCCATAAATTCTTGAGCGTCAGACGATGTATGATCCGCTTCAGCTAATTCTTTTAACCAATTTAACTTATTTTGATAAGTTTGATCTTTTTCACTTACTTTTTTA  >  USA300TCH1516_ALE/1742539‑1742679 |                                                                                                                                             tataCTTTGTCACTCTGTAAGTCATATTTTAAGGTTTCCATAAATTCTTGAGCGTCAGACGATGTATGATCCGCTTCAGCTAATTCTTTTAACCAATTTAACTTATTTTGATAAGTTTGATCTTTTTCACTTACTTTTTTa  >  2:26841/1‑141 (MQ=255) tataCTTTGTCACTCTGTAAGTCATATATTAAGGTTTCCATAAATTCTTGATCGTCAGACGATGTATGATCCGCTTCAGCTAATTCTTTTAACCAATTTAACATATTTTGATGAGTTTGATCTTTTTCACTTACTTTTTTa  >  2:26851/1‑141 (MQ=255) |                                                                                                                                             TATACTTTGTCACTCTGTAAGTCATATTTTAAGGTTTCCATAAATTCTTGAGCGTCAGACGATGTATGATCCGCTTCAGCTAATTCTTTTAACCAATTTAACTTATTTTGATAAGTTTGATCTTTTTCACTTACTTTTTTA  >  USA300TCH1516_ALE/1742539‑1742679

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑