Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1759892	1760062	171	2 [1]	[1] 2	[USA300HOU_RS08785]	[USA300HOU_RS08785]

GATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAGCGCGTAGCTACCACTTAGTAAAAGGCCCCAAACGATTCCAGTAAAAATTGAGCCAATTGCTACACTTAATAAAGGAAAAGCTTGTTTCGTAACGATTACACCTGCTAACGCGGTTACTAAAATACCTAACGTAGATAAAGCTAATGTTATTAAAAGATTGCGCTTTGTTACAGGTTCATTTTTAATA  >  USA300TCH1516_ALE/1759751‑1759992                                                                                                                                             |                                                                                                      gatgaACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAGCGCGTAGCTACCACTTAGTAAAAGGCCCCAAACGATTCCAGTAAAAATTGAGCCAATTGCTACACTTAATAAAGGAAAAGCTTGtt                                                                                                       <  1:43866/141‑1 (MQ=255)                                                                                                      aTTGAGCCAATTGCTACACTTAATAAAGGAAAAGCTTGTTTCGTAACGATTACACCTGCTAACGCGGTTACTAAAATACCTAACGTAGATAAAGCTAATGTTATTAAAAGATTGCGCTTTGTTACAGGTTCATTTTTAata  <  2:13855/141‑1 (MQ=255)                                                                                                                                             |                                                                                                      GATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAGCGCGTAGCTACCACTTAGTAAAAGGCCCCAAACGATTCCAGTAAAAATTGAGCCAATTGCTACACTTAATAAAGGAAAAGCTTGTTTCGTAACGATTACACCTGCTAACGCGGTTACTAAAATACCTAACGTAGATAAAGCTAATGTTATTAAAAGATTGCGCTTTGTTACAGGTTCATTTTTAATA  >  USA300TCH1516_ALE/1759751‑1759992

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑