Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1762854	1762951	98	2 [1]	[1] 2	fpgS	Folylpolyglutamate synthase

GTTTCACGTTCCATCATTTCACTTACTGGTTTAATACGTGATACTAATTCTACAATAGCGTCATTTGATATTGGCACACCATTTAGACTAATTCGTTCATTAAATGTTTCAATAAACGGCGACGTAAATGTACCTACTTCATAACCATTTTCAACTAAAGCTGTTCTAAGGTAAGCAA  >  USA300TCH1516_ALE/1762713‑1762890                                                                                                                                             |                                      gTTTCACGTTCCATCATTTCACTTACTGGTTTAATACGTGATACTAATTCTACAATAGCGTCATTTGATATTGGCACACCATTTAGACTAATTCGTTCATTAAATGTTTCAATAAACGGCGACGTAAATGTACCTACTTCa                                       >  2:56991/1‑141 (MQ=255)                                      gTGATACTAATTCTACAATAGCGTCATTTGATATTGGCACACCATTTAGACTAATTCGTTCATTAAATGTTTCAATAAACGGCGACGTAAATGTACCTACTTCATAACCATTTTCAACTAAAGCTGTTCTAAGGTAAGCaa  >  1:8524/1‑141 (MQ=255)                                                                                                                                             |                                      GTTTCACGTTCCATCATTTCACTTACTGGTTTAATACGTGATACTAATTCTACAATAGCGTCATTTGATATTGGCACACCATTTAGACTAATTCGTTCATTAAATGTTTCAATAAACGGCGACGTAAATGTACCTACTTCATAACCATTTTCAACTAAAGCTGTTCTAAGGTAAGCAA  >  USA300TCH1516_ALE/1762713‑1762890

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑