Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1762854	1762951	98	2 [1]	[1] 2	fpgS	Folylpolyglutamate synthase

TTATTTTGAGGATTATTAAATTGTGCTAGCATCCATTCCATACGTTTAACACCTGGTTTGATGCCAAATTTAGTTCTTTCGTGTATCCAATACAAGCTCTCTAGGTAATTCATTGTTACTAACTCCTATGCTTTTAATTGTTCAATTCTTGCCTT  >  USA300TCH1516_ALE/1762938‑1763092               |                                                                                                                                             ttATTTTGAGGATTATTAAATTGTGCTAGCATCCATTCCATACGTTTAACACCTGGTTTGATGCCAAATTTAGTTCTTTCGTGTATCCAATACAAGCTCTCTAGGTAATTCATTGTTACTAACTCCTATGCTTTTAATTGt                <  2:44502/141‑1 (MQ=255)               attaAATTGTGCTAGCATCCATTCCATACGTTTAACACCTGGTTTGATGCCAAATTTAGTTCTTTCGTGTATCCAATACAAGCTCTCTAGGTAATTCATTGTTACTAACTCCTATGCTTTTAATTGTTCAAATCTTGCCtt  <  1:56991/141‑1 (MQ=255)               |                                                                                                                                             TTATTTTGAGGATTATTAAATTGTGCTAGCATCCATTCCATACGTTTAACACCTGGTTTGATGCCAAATTTAGTTCTTTCGTGTATCCAATACAAGCTCTCTAGGTAATTCATTGTTACTAACTCCTATGCTTTTAATTGTTCAATTCTTGCCTT  >  USA300TCH1516_ALE/1762938‑1763092

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑