Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1813307	1813400	94	2 [1]	[1] 2	dnaE	DNA polymerase III subunit alpha

ATGTGCTCTAGGAAAACCATAATCAGCAAATTTCAGAATCAAATCAAATATTTGCTTACTAATGTCTTCGTGATAACCATTTTGCTTTGCACCTTCTATAAAATGTTGACGCTCACTTTCAAGAACAGCTCTATTTTTTTTACTCATTGCTCTTCTTAAAATATCCGCTTCACCATAAC  >  USA300TCH1516_ALE/1813166‑1813344                                                                                                                                             |                                       aTGTGCTCTAGGAAAACCATAATCAGCAAATTTCAGAATCAAATCAAATATTTGCTTACTAATGTCTTCGTGATAACCATTTTGCTTTGCACCTTCTATAAAATGTTGACGCTCACTTTCAAGAACAGCTCTAtttttttt                                        <  2:36995/141‑1 (MQ=255)                                       tcaaatcaaaTATTTGCTTACTAATGTCTTCGTGATAACCATTTTGCTTTGCACCTTCTATAAAATGTTGACGCTCACTTTCAAGAACAGCTCTATTTTTTTTACTCATTGCTCTTCTTAAAATATCCGCTTCACCATAAc  <  2:22363/141‑1 (MQ=255)                                                                                                                                             |                                       ATGTGCTCTAGGAAAACCATAATCAGCAAATTTCAGAATCAAATCAAATATTTGCTTACTAATGTCTTCGTGATAACCATTTTGCTTTGCACCTTCTATAAAATGTTGACGCTCACTTTCAAGAACAGCTCTATTTTTTTTACTCATTGCTCTTCTTAAAATATCCGCTTCACCATAAC  >  USA300TCH1516_ALE/1813166‑1813344

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑