Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1813307	1813400	94	2 [1]	[1] 2	dnaE	DNA polymerase III subunit alpha

CAAATGTGCTCGCTATTTGCATAATTTGCTCTTGATAAATAATAACACCGTAAGTATTTTTTAATATAGGTTCTAAATGCGGATGTAAATATTGAACTTTGCTTGGATCATGTCTTCTTGTAATGTAAGTTGGAATTTCTTCCATTGGACCTGGTCTATACAAAGAAGTTACAGCAACAATATCTTCA  >  USA300TCH1516_ALE/1813354‑1813541                                                |                                                                                                                                             cAAATGTGCTCGCTATTTGCATAATTTGCTCTTGATAAATAATAACACCGTAAGTATTTTTTAATATAGGTTCTAAATGCGGATGTAAATATTGAACTTTGCTTGGATCATGTCTTCTTGTAATGTAAGTTGGAATttctt                                                 >  1:48807/1‑141 (MQ=255)                                                ccGTAAGTATTTTTTAATATAGGTTCTAAATGCGGATGTAAATATTGAACTTTGCTTGGATCATGTCTTCTTGTAATGTAAGTTGGAATTTCTTCCATTGGACCTGGTCTATACAAAGAAGTTACAGCAACAATATCTTCa  >  1:37580/1‑141 (MQ=255)                                                |                                                                                                                                             CAAATGTGCTCGCTATTTGCATAATTTGCTCTTGATAAATAATAACACCGTAAGTATTTTTTAATATAGGTTCTAAATGCGGATGTAAATATTGAACTTTGCTTGGATCATGTCTTCTTGTAATGTAAGTTGGAATTTCTTCCATTGGACCTGGTCTATACAAAGAAGTTACAGCAACAATATCTTCA  >  USA300TCH1516_ALE/1813354‑1813541

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑