Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1888383	1888585	203	2 [1]	[1] 2	[mdtH]	[mdtH]

TCCCAATAGTCTTGCCATTTCTTTTCAATTTGATTGTGGTTATAATTCAACACATTTCCTCCTATTCAATAAAAAAGACACCTCTAACTATTCTATTTACATAGGGACGACATTTGCCGCGTTACCACCCTATTTCACAAAAATTGTGCACTCATTTTAATAGTAAGAGATGTCATTCATTCAATTTAAAATTAATACGATTTACATTTAGTCCTTAACACTA  >  USA300TCH1516_ALE/1888242‑1888464                                                                                                                                             |                                                                                   tCCCAATAGTCTTGCCATTTCTTTTCAATTTGATTGTGGTTATAATTCAACACATTTCCTCCTATTCAATAAAAAAGACACCTCTAACTATTCTATTTACATAGGGACGACATTTGCCGCGTTACCACCCTATTTCACaaa                                                                                    <  1:16611/141‑1 (MQ=255)                                                                                   tctAACTATTCTATTTACATAGGGACGACATTTGCCGCGTTACCACCCTATTTCACAAAAATTGTGCACTCATTTTAATAGTAAGAGATGTCATTCATTCAATTTAAAATTAATACGATTTACATTTAGTCCTTAACACTa  <  2:31860/141‑1 (MQ=255)                                                                                                                                             |                                                                                   TCCCAATAGTCTTGCCATTTCTTTTCAATTTGATTGTGGTTATAATTCAACACATTTCCTCCTATTCAATAAAAAAGACACCTCTAACTATTCTATTTACATAGGGACGACATTTGCCGCGTTACCACCCTATTTCACAAAAATTGTGCACTCATTTTAATAGTAAGAGATGTCATTCATTCAATTTAAAATTAATACGATTTACATTTAGTCCTTAACACTA  >  USA300TCH1516_ALE/1888242‑1888464

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑