Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1888383	1888585	203	2 [1]	[1] 2	[mdtH]	[mdtH]

TGCATCTATTTTTTTAGGTTGCGTATTATTCTCCTTGAAAACCATTAATAATATTAATGCAAATACAAGTAGTAGCATCATACCGATAAACATCATGCGCATATTAAACGCATCAACTAATACACCACCAAGAAATGGACCA  >  USA300TCH1516_ALE/1888585‑1888726  |                                                                                                                                             tGCATCTATTTTTTTAGGTTGCGTATTATTCTCCTTGAAAACCATTAATAATATTAATGCAAATACAAGTAGTAGCATAAAACCGATAAACATCATGCGCATATTAAACGCATCAACTAATACACCACCAAGAAATGGAcc   >  1:33879/1‑141 (MQ=255)  gCATCTATTTTTTTTTGTTTCGTATTATTTTCCTTGAAAACCTTTATTAATATTAATGCAAATACATGTAGTAGCATCATACCGATAAACATCATGCGCATATTAAACGCATCTACTAATACACCACCAAGAAATGGACCa  >  2:13547/1‑141 (MQ=255)  |                                                                                                                                             TGCATCTATTTTTTTAGGTTGCGTATTATTCTCCTTGAAAACCATTAATAATATTAATGCAAATACAAGTAGTAGCATCATACCGATAAACATCATGCGCATATTAAACGCATCAACTAATACACCACCAAGAAATGGACCA  >  USA300TCH1516_ALE/1888585‑1888726

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑