Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1915881	1916062	182	2 [1]	[1] 2	metK/pckA	S‑adenosylmethionine synthase/Phosphoenolpyruvate carboxykinase (ATP)

CATCTGACACTTGGTCAGCGATTTTATCTGGGTGTCCTTCTGTAACAGACTCTGAAGTAAATAATCGTTTGTTATTTAACATAGTTTGCTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCG  >  USA300TCH1516_ALE/1915740‑1915926                                                                                                                                             |                                               cATCTGACACTTGGTCAGCGATTTTATCTGGGTGTCCTTCTGTAACAGACTCTGAAGTAAATAATCGTTTGTTATTTAACATAGTTTGCTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTAAAAAAAAAAAAAAAg                                                <  2:56297/141‑1 (MQ=255)                                               ataCTCTGAAGTAAATAATCGTTTGTTATTTAACATAGTTTGCTCCTTTAGATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCg  <  1:45699/139‑1 (MQ=255)                                                                                                                                             |                                               CATCTGACACTTGGTCAGCGATTTTATCTGGGTGTCCTTCTGTAACAGACTCTGAAGTAAATAATCGTTTGTTATTTAACATAGTTTGCTCCTTTAAATTTATATTACGAAAATTCTCTCTCTGTGAGCTAAATAAAAAAGACCTTCTAACTATTAATATAGAGAGAAGGCCTAATACGTCCATTCG  >  USA300TCH1516_ALE/1915740‑1915926

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑