Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1932292	1932429	138	2 [1]	[1] 3	USA300HOU_RS09605	hypothetical protein

CATTCGATTGATGCGAAGGAAGTGGTGAGGGTACTAGTATTTTTGATTCTTTATCAATTTCAAGTAATAGTAAAGTAGGATCAATATCTCTAATATAATCATCCCATAGTCCAGAATATTGAACATCAGGAAATTTATCTACAAGTTTAGCTAAAATTTCATAGTAAGCAATCCATTGAT  >  USA300TCH1516_ALE/1932151‑1932330                                                                                                                                             |                                        cattcGATTGATGCGAAGGAAGTGGTGAGGGTACTAGTATTTTTGATTCTTTATCAATTTCAAGTAATAGTAAAGTAGGATCAATATCTCTAATATAATCATCCCATAGTCCAGAATATTGAACATCAGGAAATTTATCTa                                         >  2:25052/1‑141 (MQ=255)                                        tttttGATTCTTTATCAATTTCAAGTAATAGTAAAGTAGGATCAATATCTCTAATATAATCATCCCATAGTCCAGAATATTGAACATCAGGAAATTTATCTACAAGTTTAGCTAAAATTTCATAGTAAGCAATCCATTGat  <  1:21340/141‑1 (MQ=255)                                                                                                                                             |                                        CATTCGATTGATGCGAAGGAAGTGGTGAGGGTACTAGTATTTTTGATTCTTTATCAATTTCAAGTAATAGTAAAGTAGGATCAATATCTCTAATATAATCATCCCATAGTCCAGAATATTGAACATCAGGAAATTTATCTACAAGTTTAGCTAAAATTTCATAGTAAGCAATCCATTGAT  >  USA300TCH1516_ALE/1932151‑1932330

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑