Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1932292	1932429	138	2 [1]	[1] 3	USA300HOU_RS09605	hypothetical protein

TCATAACCCATTTCAAAAATCCTCATTAATGCTATATTACTTAAGTCTTGATCACTTTTAAAACCCTTTACCCAGTTTCGTACAGCATAACCAAATACATATCTGCCAAAATCGCCATATGCCCCAGTTCCTCTTCCATATTCCGTTGTCATTGAGT  >  USA300TCH1516_ALE/1932414‑1932570                 |                                                                                                                                             tcatAACCCATTTCAAAAATCCTCATTAATGCTATATTACTTAAGTCTTGATCACTTTTAAAACCCTTTACCCAGTTTCGTACAGCATAACCAAATACATATCTGCCAAAATCGCCGTATGCCCCAGTTCCTCTTCCatat                  <  1:25052/141‑1 (MQ=255)                 aaaTCCTCATTAATGCTATATTACTTAAGTCTTGATCACTTTTAAAACCCTTTACCCAGTTTCGTACAGCATAACCAAATACATATCTGCCAAAATCGCCATATGCCCCAGTTCCTCTTCCATATTCCGTTGTCATTGAGt  >  1:56499/1‑141 (MQ=255)                 aaaTCCTCATTAATGCTATATTACTTAAGTCTTGATCACTTTTAAAACCCTTTACCCAGTTTCGTACAGCATAACCAAATACATATCTGCCAAAATCGCCATATGCCCCAGTTCCTCTTCCATATTCCGTTGTCATTGAGt  >  1:56500/1‑141 (MQ=255)                 |                                                                                                                                             TCATAACCCATTTCAAAAATCCTCATTAATGCTATATTACTTAAGTCTTGATCACTTTTAAAACCCTTTACCCAGTTTCGTACAGCATAACCAAATACATATCTGCCAAAATCGCCATATGCCCCAGTTCCTCTTCCATATTCCGTTGTCATTGAGT  >  USA300TCH1516_ALE/1932414‑1932570

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑