Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1988768	1988872	105	2 [1]	[1] 2	trmL	tRNA (cytidine(34)‑2'‑O)‑methyltransferase

TTATAATGAAAATGAGTAAATTTTAATTCAATCCCGGAAAATCTTGTTGACGTAACGCTTCATAAATTAACAACGCAGCAGTATTTGATAAATTTAATGAACGAATATGTTCACTCATAGGAATTCTTAACGCTGTGTCTTGATATTTCTCTTTCACCCAGTCTGGT  >  USA300TCH1516_ALE/1988627‑1988793                                                                                                                                             |                           ttATAATGAAAATGAGTAAATTTTAATTCAATCCCGGAAAATCTTGTTGACGTAACGCTTCATAAATTAACAACGCAGCAGTATTTGATAAATTTAATGAACGAATATGTTCACTCATAGGAATTCTTAACGCTGTGTCtt                            <  1:4531/141‑1 (MQ=255)                           ttCAATCCCGGAAAATCTTGTTGACGTAACGCTTCATAAATTAACAACGCAGCAGTATTTGATAAATTTAATGAACGAATATGTTCACTCATAGGAATTCTTAACGCTGTGTCTTGATATTTCTCTTTCACCCAGTCTGGt  <  2:8236/141‑1 (MQ=255)                                                                                                                                             |                           TTATAATGAAAATGAGTAAATTTTAATTCAATCCCGGAAAATCTTGTTGACGTAACGCTTCATAAATTAACAACGCAGCAGTATTTGATAAATTTAATGAACGAATATGTTCACTCATAGGAATTCTTAACGCTGTGTCTTGATATTTCTCTTTCACCCAGTCTGGT  >  USA300TCH1516_ALE/1988627‑1988793

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑