Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1988768	1988872	105	2 [1]	[1] 2	trmL	tRNA (cytidine(34)‑2'‑O)‑methyltransferase

CAAAAATGAAGTAAAAATCTTTGTCATGATTTGAAAAATCAAAATCACTATAAGTCTTTTTACCAAATTTTGTTAATAAGTAATACTCGCCATTTGTGACTTCAAAAAATGCTTCAATACTATCATGATACGTAATATTCACAAATTCCCAATAATCTAAACCGGCTCTTTTTAACATTTTATCATCAGTTCTAAATCCAA  >  USA300TCH1516_ALE/1988813‑1989013                                                             |                                                                                                                                             cAAAAATGAAGTAAAAATCTTTGTCATGATTTGAAAAATCAAAATCACTATAAGTATTTATAACAAATATTGTTAATAAGCAATACTCGCCAAAAAAAAAAAAAAAAAATGCTTCAATACTATCATGATACGTAATATTca                                                              <  2:35707/141‑1 (MQ=255)                                                             tACCAAATTTTGTTAATAAGTAATACTCGCCATTTGTGACTTCAAAAAATGCTTCAATACTATCATGATACGTAATATTCACAAATTCCCAATAATCTAAACCGGCTCTTTTTAACATTTTATCATCAGTTCTAAATCCaa  >  2:44132/1‑141 (MQ=255)                                                             |                                                                                                                                             CAAAAATGAAGTAAAAATCTTTGTCATGATTTGAAAAATCAAAATCACTATAAGTCTTTTTACCAAATTTTGTTAATAAGTAATACTCGCCATTTGTGACTTCAAAAAATGCTTCAATACTATCATGATACGTAATATTCACAAATTCCCAATAATCTAAACCGGCTCTTTTTAACATTTTATCATCAGTTCTAAATCCAA  >  USA300TCH1516_ALE/1988813‑1989013

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑