Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2020927	2021071	145	2 [1]	[1] 2	queE_2	7‑carboxy‑7‑deazaguanine synthase

TAAAATTATATGAACAAATGATTTCGAATGCACGTACATTATCAGAACAAGGAATGTTTGTATCTGCGGAAACAATGCTCAATCAAAGTACGCTACCACATTTACGAAAAATACATCAAGAAGTCGTTCATGATATGAAATGTAGCAGACACGAGATTCAC  >  USA300TCH1516_ALE/2020786‑2020946                                                                                                                                             |                     tAAAATTATATGAACAAATGATTTCGAATGCCCGTACATTATCAGAACAAGGAGTGTTTGGATCTGCGGAAACAATGCTCAATCAAAGTACGCTACCACATTTACGAAAAATACATCAAGGAGTCGCTCATGATAGGAAAt                      >  2:54898/1‑141 (MQ=255)                     aTTTCGAATGCACGTACATTATCAGAACAAGGAATGTTTGTATCTGCGGAAACAATGCTCAATCAAAGTACGCTACCACATTTACGAAAAATACATCAAGAAGTCGTTCATGATATGAAATGTAGCAGACACGAGATTCAc  >  1:63604/1‑141 (MQ=255)                                                                                                                                             |                     TAAAATTATATGAACAAATGATTTCGAATGCACGTACATTATCAGAACAAGGAATGTTTGTATCTGCGGAAACAATGCTCAATCAAAGTACGCTACCACATTTACGAAAAATACATCAAGAAGTCGTTCATGATATGAAATGTAGCAGACACGAGATTCAC  >  USA300TCH1516_ALE/2020786‑2020946

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑