Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2086748	2086828	81	2 [1]	[1] 2	scn_3	Staphylococcal complement inhibitor

TTTTTGACCTGAAATTTTTATAGTTCGCTTATAATAAGTGTTTAAACTTCCAGTAGCTAATTCATTAACATTTAGTTCATCTAATAACGATTTTAATTCATTAGCTAACTTTTCGTTTTGATATTCATTCGATGTTGGCAAGCTTGTGCTAGCTTGTGCCTCATTTTTATCTAGATTAGT  >  USA300TCH1516_ALE/2086607‑2086786                                                                                                                                             |                                        tttttGACCTGAAATTTTTATAGTTCGCTTATAATAAGTGTTTAAACTTCCAGTAGCTAATTCATTAACATTTAGTTCATCTAATAACGATTTTAATTCATTAGCTAACTTTTCGTTTTGATATTCATTCGATGTTGGaaa                                         >  1:9164/1‑141 (MQ=255)                                        gtTTAAACTTCCAGTAGCTAATTCATTAACATTTAGTTCATCTAATAACGATTTTAATTCATTAGCTAACTTTTCGTTTTGATATTCATTCGATGTTGGCAAGCTTGTGCTAGCTTGTGCCTCATTTTTATCTAGATTAGt  <  1:23584/141‑1 (MQ=255)                                                                                                                                             |                                        TTTTTGACCTGAAATTTTTATAGTTCGCTTATAATAAGTGTTTAAACTTCCAGTAGCTAATTCATTAACATTTAGTTCATCTAATAACGATTTTAATTCATTAGCTAACTTTTCGTTTTGATATTCATTCGATGTTGGCAAGCTTGTGCTAGCTTGTGCCTCATTTTTATCTAGATTAGT  >  USA300TCH1516_ALE/2086607‑2086786

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑