Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2086748	2086828	81	2 [1]	[1] 2	scn_3	Staphylococcal complement inhibitor

TGCTAAAACGATTGCTAAAGTTCCCGCAAGTATAGATTTTCTAATTTTCATTTTTTATTCTCCTTAGTAATTAGTACTAATTTATTTTAATGACTGACTAAAAAAAAGTACATTAATTATTCATTAACTATATAGATCTTCTTATTAAATGAAAATTAATAAATTATCAAA  >  USA300TCH1516_ALE/2086799‑2086969                               |                                                                                                                                             tGCTAAAACGATTGCTAAAGTTCCCGCAAGTATAGATTTTCTAATTTTCATTTTTTATTCTCCTTAGTAATTAGTACTAATTTATTTTAATGACTGACTAAAAAAAAGTACATTAATTATTCATTAACTATATAGAtcttc                                <  2:62612/141‑1 (MQ=255)                               tataGATTTTCTAATTTTCATTTTTTATTCTCCTTAGTAAATAGTACTAATTTATTTTAATGAAAAAAAAAAAAAAAGTACATTAATTATTCATTAACTATATAGATCTTCTTATTAAATGAAAATTAATAAATTATCaaa  <  2:52201/141‑1 (MQ=255)                               |                                                                                                                                             TGCTAAAACGATTGCTAAAGTTCCCGCAAGTATAGATTTTCTAATTTTCATTTTTTATTCTCCTTAGTAATTAGTACTAATTTATTTTAATGACTGACTAAAAAAAAGTACATTAATTATTCATTAACTATATAGATCTTCTTATTAAATGAAAATTAATAAATTATCAAA  >  USA300TCH1516_ALE/2086799‑2086969

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑