Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2144825	2144936	112	2 [1]	[1] 2	[USA300HOU_RS10945]	[USA300HOU_RS10945]

AGTATAATAAATATGCGTTGAAAATGCATTTATATTTGGAATTTGAAAATGAATATTAATATTCTTGAAATTTTCGTAAATATTGCTTTACAAGTACGAGTATAAATTTTATACTTAGTCTATTAAGTATTCTTTACTAAAGAAGGAGCAATAATTATGGGCTTATTTAAAAAAGATAAAAAAGCAATGACTTTTGACAATGCAATGGAAGAAA  >  USA300TCH1516_ALE/2144684‑2144897                                                                                                                                             |                                                                          aGTATAATAAATATGCGTTGAAAATGCATTTATATTTGGAATTTGAAAATGAATATTAATATTCTTGAAATTTTCGTAAATATTGCTTTACAAGTACGAGTATAAATTTTATACTTAGTCTATTAAGTATTCTTTACTaaa                                                                           >  1:25863/1‑141 (MQ=255)                                                                          acGTAAATATTGCATTACAAGTACGAGTATAAATTTTATACTTAGTCTATTAAGTATTCTATACTAAAGAAGGAGCAATAATTATGGGCTTATAAAAAAAAAAAAAAAAAGCAATGACTTTTGACAATGCAATGGaagaaa  <  2:3674/140‑1 (MQ=255)                                                                                                                                             |                                                                          AGTATAATAAATATGCGTTGAAAATGCATTTATATTTGGAATTTGAAAATGAATATTAATATTCTTGAAATTTTCGTAAATATTGCTTTACAAGTACGAGTATAAATTTTATACTTAGTCTATTAAGTATTCTTTACTAAAGAAGGAGCAATAATTATGGGCTTATTTAAAAAAGATAAAAAAGCAATGACTTTTGACAATGCAATGGAAGAAA  >  USA300TCH1516_ALE/2144684‑2144897

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑