Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2144825	2144936	112	2 [1]	[1] 2	[USA300HOU_RS10945]	[USA300HOU_RS10945]

GTTCAATATATAATTTGAAAGATTCGATATCAATTAGCGATGACGAATTAGAATCAATGATTGCACATGCAGTTAAACATGTTCCTTCATCATTTAATTCTCAATCAACTAGAATTGTTCTCTTGTTAAATGACAACAATAATAAATTTTGGGATAACACAAAAGCAATTTTAAAAG  >  USA300TCH1516_ALE/2144901‑2145077                                     |                                                                                                                                             gTTCAATATATAATTTGAAAGATTCGATATCAATTAGCGATGACGAATTAGAATCAATGATTGCACATGCAGTTAAACATGTTCCTTCATCATTTAATTCTCAATCAACTAGAATTGTTCTCTTGTTAAATGACAACaata                                      >  1:2658/1‑141 (MQ=255)                                     gCGATGACGAATTAGAATCAATGATTGCACATGCAGTTAAACATGTTCCTTCATCATTTAATTCTCAATCAACTAGAATTGTTCTCTTGTTAAATGACAACAATAATAAATTTTGGGATAACACAAAAGCAATTTTAAaag  <  2:25863/141‑1 (MQ=255)                                     |                                                                                                                                             GTTCAATATATAATTTGAAAGATTCGATATCAATTAGCGATGACGAATTAGAATCAATGATTGCACATGCAGTTAAACATGTTCCTTCATCATTTAATTCTCAATCAACTAGAATTGTTCTCTTGTTAAATGACAACAATAATAAATTTTGGGATAACACAAAAGCAATTTTAAAAG  >  USA300TCH1516_ALE/2144901‑2145077

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑