Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2212491	2212532	42	2 [1]	[1] 2	yidC	Membrane protein insertase YidC

CAGCCATTTTTTCTTCTTGTGTACGCGCACGTTTCACTTTTTCTTGAATTTTTTCAACTTCTGGCTTTGCAACTTTCATTTTTTGACGCATCATATGACTATTTTTATAGTTTGACAACATGAATGGTAATAAAATAATACGAA  >  USA300TCH1516_ALE/2212350‑2212493                                                                                                                                             |    cAGCCATTTTTTCTTCTTGTGTACGCGCACGTTTCACTTTTTCTTGAATTTTTTCAACTTCTGGCTTTGCAACTTTCATTTTTTGACGCATCATATGACTATTTTTATAGTTTGACAACATGAATGGTAATAAAATAATAc     <  2:18477/141‑1 (MQ=255)    ccATTTTTTCTTCTTGTGTACGCGCACGTTTCACTTTTTCTTGAATTTTTTCAACTTCTGGCTTTGCAACTTTCATTTTTTGACGCATCATATGACTATTTTTATAGTTTGACAACATGAATGGTAATAAAATAATACGaa  <  1:5475/141‑1 (MQ=255)                                                                                                                                             |    CAGCCATTTTTTCTTCTTGTGTACGCGCACGTTTCACTTTTTCTTGAATTTTTTCAACTTCTGGCTTTGCAACTTTCATTTTTTGACGCATCATATGACTATTTTTATAGTTTGACAACATGAATGGTAATAAAATAATACGAA  >  USA300TCH1516_ALE/2212350‑2212493

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑