Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2212491	2212532	42	2 [1]	[1] 2	yidC	Membrane protein insertase YidC

AGGATAATAATAGCTAAACCATAATTGTCGTTTAATAAGTTATTTCCCAACCAATCCAATACATTTTTCATTGGATCTACGAATGTATTGTAGAAAAACCCACTACGTTTTTCAGGTTTAGAATAGTCACAACCAGCCAAAAAGACCATAATACCTAAAAATAATGGTA  >  USA300TCH1516_ALE/2212505‑2212673                             |                                                                                                                                             aGGATAATAATAGCTAAACCATAATTGTCGTTTAATAAGTTATTTCCCAACCAATCCAATACATTTTTCATTGGATCTACGAATGTATTGTAGAAAAACCCACTACGTTTTTCAGGTTTAGAATAGTCACAACCAGCCaaa                              >  1:42180/1‑141 (MQ=255)                             cGTTTAATAAGTTATTTCCCAACCAATCCAATACATTTTTCATTGGATCTACGAATGTATTGTAGAAAAACCCACTACGTTTTTCAGGTTTAGAATAGTCACAACCAGCCAAAAAGACCATAATACCTAAAAATAATGgta  >  2:9804/1‑141 (MQ=255)                             |                                                                                                                                             AGGATAATAATAGCTAAACCATAATTGTCGTTTAATAAGTTATTTCCCAACCAATCCAATACATTTTTCATTGGATCTACGAATGTATTGTAGAAAAACCCACTACGTTTTTCAGGTTTAGAATAGTCACAACCAGCCAAAAAGACCATAATACCTAAAAATAATGGTA  >  USA300TCH1516_ALE/2212505‑2212673

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑