Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2214670	2214749	80	2 [1]	[1] 2	thiD	Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase

AATAAAGATGCGGCCAGCCTGCATAATTTTTTCTTCACTATCAATGGTTAGTCCCGTTATTTCTTCAGCTTCTGGTAAATTCGGTGTTACTACGTCAGCTAATGGCAATAACGTATGCTGCAAGTTTTGCTTTGTGTCATTATCCATTAATGAATCACCGCTTTTCGCCAACATAACAGGATCA  >  USA300TCH1516_ALE/2214529‑2214712                                                                                                                                             |                                            aataaAGATGCGGCCAGCCTGCATAATTTTTTCTTCACTATCAATGGTTAGTCCCGTTATTTCTTCAGCTTCTGGTAAATTCGGTGTTACTACGTCAGCTAATGGCAATAACGTATGCTGCAAGTTTTGCTTTGTGTCAtt                                             <  2:33086/141‑1 (MQ=255)                                            aTGGTTAGTCCCGTTATTTCTTCAGCTTCTGGTAAATTCGGTGTTACTACGTCAGCTAATGGCAATAACGTATGCTGCAAGTTTTGCTTTGTGTCATTATCCATTAATGAATCACCGCTTTTCGCCAACATAACAGGATCa  >  1:34197/1‑141 (MQ=255)                                                                                                                                             |                                            AATAAAGATGCGGCCAGCCTGCATAATTTTTTCTTCACTATCAATGGTTAGTCCCGTTATTTCTTCAGCTTCTGGTAAATTCGGTGTTACTACGTCAGCTAATGGCAATAACGTATGCTGCAAGTTTTGCTTTGTGTCATTATCCATTAATGAATCACCGCTTTTCGCCAACATAACAGGATCA  >  USA300TCH1516_ALE/2214529‑2214712

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑