Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2214670	2214749	80	2 [1]	[1] 2	thiD	Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase

AATAATGACGAATCGTTTCCATAGTATCTGCTGTAGCAATCATCCCCGTTTTAATAGCATGAGGTAAGGTATCATTGAAGACACTATCAAGTTGTTCATCTACCCATTGATGATTTAAATTATGAATATGTTGTACGCCCAATGTAT  >  USA300TCH1516_ALE/2214744‑2214890       |                                                                                                                                             aataatGACGAATCGTTTCCATAGTATCTGCTGTAGCAATCATCCCCGTTTTAATAGCATGAGGTAAGGTATCATTGAAGACACTATCAAGTTGTTCATCTACCCATTGATGATTTAAATTATGAATATGTTGTACGCCCa        >  1:35247/1‑141 (MQ=255)       gACGAATCGTTTCCATAGTATCTGCTGTAGCAATCATCCCCGTTTTAATAGCATGAGGTAAGGTAACATTGAAGTCACTATCAAGTTGTTCTTCTACCCATTGATGATTTAAATTATGAATATGTTGTACGCCCAATGTAt  >  1:19018/1‑141 (MQ=255)       |                                                                                                                                             AATAATGACGAATCGTTTCCATAGTATCTGCTGTAGCAATCATCCCCGTTTTAATAGCATGAGGTAAGGTATCATTGAAGACACTATCAAGTTGTTCATCTACCCATTGATGATTTAAATTATGAATATGTTGTACGCCCAATGTAT  >  USA300TCH1516_ALE/2214744‑2214890

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑