Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2299179	2299277	99	2 [1]	[1] 2	[salA]	[salA]

CGTTTTCTTTTAATGCATTAACAACAGCCATCTGTAAATCTAATTGCGGTGCACCACCTAATTGTGCCATTGCTAATTTAACACTCACATGTTCTTTTTCTTCCTTAATAGAAACTTCAACAATACCTTCTGTTTCTTTTAAAGGCACATCTATAATAGGATCTTTAATTTCTCCTAC  >  USA300TCH1516_ALE/2299038‑2299215                                                                                                                                             |                                      cGTTTTCTTTTAATGCATTAACAACAGCCATCTGTAAATCTAATTGCGGTGCACCACCTAATTGTGCCATTGCTAATTTAACACTCACATGTTCTTTTTCTTCCTTAATAGAAACTTCAACAATACCTTCTGTTTCTTTTa                                       <  1:11449/141‑1 (MQ=255)                                      aTCTAATTGCGGTGCACCACCTAATTGTGCCATTGCTAATTTAACACTCACATGTTCTTTTTCTTCCTTAATAGAAACTTCAACAATACCTTCTGTTTCTTTTAAAGGCACATCTATAATAGGATCTTTAATTTCTCCTAc  <  2:61966/141‑1 (MQ=255)                                                                                                                                             |                                      CGTTTTCTTTTAATGCATTAACAACAGCCATCTGTAAATCTAATTGCGGTGCACCACCTAATTGTGCCATTGCTAATTTAACACTCACATGTTCTTTTTCTTCCTTAATAGAAACTTCAACAATACCTTCTGTTTCTTTTAAAGGCACATCTATAATAGGATCTTTAATTTCTCCTAC  >  USA300TCH1516_ALE/2299038‑2299215

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑