Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2299179	2299277	99	2 [1]	[1] 2	[salA]	[salA]

ACTTGATCTACCGTTAACAAAGCAAATCCCCCTTAATCATTTTAAGACATCTACATCATAGCAAATAACAATTTTTGCTTAGTCTATCACTAAAAGTATAAAACTTTTTATTAAATAAAAAAAGCAGTTAGCCTATTATTTTAAATAGACCAACTACTATAATTATTTTAAAATTTCCTTCTATTACTTTCTA  >  USA300TCH1516_ALE/2299226‑2299418                                                     |                                                                                                                                             aCTTGATCTACCGTTAACAAAGCAAATCCCCCTTAATCATTTTAAGACATCTACATCATAGCAAATAACAATTTTTGCTTAGTCTATCACTAAAAGTATAAAACTTTTTATTAAATAAAAAAAGCAGTTAGCCTATTAttt                                                      >  1:53922/1‑141 (MQ=255)                                                     aCATCATAGCAAATAACAATTTTTGCTTAGTCTATCACTAAAAGTATAAAACTTTTTATTAAATAAAAAAAGCAGTTAGCCTATTATTTTAAATAGACCAACTACTATAATTATTTTAAAATTTCCTTCTATTACTTTCTa  >  2:15363/1‑141 (MQ=255)                                                     |                                                                                                                                             ACTTGATCTACCGTTAACAAAGCAAATCCCCCTTAATCATTTTAAGACATCTACATCATAGCAAATAACAATTTTTGCTTAGTCTATCACTAAAAGTATAAAACTTTTTATTAAATAAAAAAAGCAGTTAGCCTATTATTTTAAATAGACCAACTACTATAATTATTTTAAAATTTCCTTCTATTACTTTCTA  >  USA300TCH1516_ALE/2299226‑2299418

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑