Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2299862	2299975	114	2 [1]	[1] 2	emrY	putative multidrug resistance protein EmrY

GAAACTGAAAACATTCTAATTGCATATACGACTATTAAATACGTATAAGATGTGTCTGTATGCAAGAAACACAACATAATTGTAGTAATTGTTAAAATTGTAAAACCAGTATAAATCAATGGTCTAGGACCATACTTATCATAAAA  >  USA300TCH1516_ALE/2299721‑2299866                                                                                                                                             |      gAAACTGACAACATTCTAATTGCATATACGACTATTAAATACGTATAAGATGTGTCTGTATGCAAGAAACACAACATAATTGTAGTAATTGTTAAAATTGTAAAACCAGTATAAATCAATGGTCTAGGACCATACTTATCa       <  2:20540/141‑1 (MQ=255)      tGAAAACATTCTAATTGCATATACGACTATTAAATACGTATAAGATGTGTCTGTATGCAAGAAACACAACATAATTGTAGTAATTGTTAAAATTGTAAAACCAGTATAAATCAATGGTCTAGGACCATACTTATCATaaaa  <  1:22635/141‑1 (MQ=255)                                                                                                                                             |      GAAACTGAAAACATTCTAATTGCATATACGACTATTAAATACGTATAAGATGTGTCTGTATGCAAGAAACACAACATAATTGTAGTAATTGTTAAAATTGTAAAACCAGTATAAATCAATGGTCTAGGACCATACTTATCATAAAA  >  USA300TCH1516_ALE/2299721‑2299866

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑