Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2299862	2299975	114	2 [1]	[1] 2	emrY	putative multidrug resistance protein EmrY

TGATAACAAGTCCTGATAACAAGGCAGATAAAGATAAACTGTTTTGAACATATAGCGGTATAAGCAGCGCAGGTCCAACCATTGACATCATTATAATCATTGAACTAATCGTACATAATGCAAATGTTCTATTTTTAAAAACCCTTAAATTTAAAAGTGCATTAGTAATATTAAATTGTCTACGTATAAATAAATAGATAATA  >  USA300TCH1516_ALE/2299914‑2300116                                                               |                                                                                                                                             tGATAACAAGTCCTGATAACAAGGCAGATAAAGATAAACTGTTTTGAACATATAGCGGTATAAGCAGCGCAGGTCCAACCATTGACATCATTATAATCATTGAACTAATCGTACATAATGCAAATGTTCTATTTTTaaaaa                                                                >  1:8068/1‑141 (MQ=255)                                                               agcagcGCAGGTCCAACCATTGACATCATTATAATCATTGAACTAATCGTACATAATGCAAATGTTCTATTTTTAAAAACCCTTAAATTTAAAAGTGCATTAGTAATATTAAATTGTCTACGTATAAATAAATAGataata  >  1:58009/1‑141 (MQ=255)                                                               |                                                                                                                                             TGATAACAAGTCCTGATAACAAGGCAGATAAAGATAAACTGTTTTGAACATATAGCGGTATAAGCAGCGCAGGTCCAACCATTGACATCATTATAATCATTGAACTAATCGTACATAATGCAAATGTTCTATTTTTAAAAACCCTTAAATTTAAAAGTGCATTAGTAATATTAAATTGTCTACGTATAAATAAATAGATAATA  >  USA300TCH1516_ALE/2299914‑2300116

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑