Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2348120	2348229	110	2 [1]	[1] 2	USA300HOU_RS11980	hypothetical protein

ATATTGTTCAAATACTTTTGAGTACATACTACAATCATCAGATATTTTTTTATCATACGAGGATATTAAACTTTCTATTTTTTTATGAATTAACAATTTTTGAACATTTAATTTTTTAAATAATTCATCAATATATTTTTTCCATACTTCTTTGAAATTTATTTCATTTTCTAGATATTTCATTAAAATTTCAT  >  USA300TCH1516_ALE/2347979‑2348172                                                                                                                                             |                                                      atatTGTTCAAATACTTTTGAGTACATACTACAATCATCAGATATTTTTTGAGCATACGAGGATATTAAACTTTCTATTTTTTTATGAATTAACAATTTTTGAACATTTAATTTTTTAAATAATTCATCAATATAtttttt                                                       >  2:54969/1‑141 (MQ=255)                                                      cATACGAGGATATTAAACTTTCTATTTTTTTATGAATTAACAATTTTTGAACATTTAATTTTTTTAATACTTTATCATTATATTTTTTCCATACTTCTTTGAAATTTATTTCATTTTCTAGATatttcattaaaatttcat  <  1:54969/141‑1 (MQ=255)                                                                                                                                             |                                                      ATATTGTTCAAATACTTTTGAGTACATACTACAATCATCAGATATTTTTTTATCATACGAGGATATTAAACTTTCTATTTTTTTATGAATTAACAATTTTTGAACATTTAATTTTTTAAATAATTCATCAATATATTTTTTCCATACTTCTTTGAAATTTATTTCATTTTCTAGATATTTCATTAAAATTTCAT  >  USA300TCH1516_ALE/2347979‑2348172

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑