Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2348120	2348229	110	2 [1]	[1] 2	USA300HOU_RS11980	hypothetical protein

CTATATTCTGATGATTCGATTTTTGTATTGAATTCTTCTTTAACATAGTTAGAAGAAAAAACAATTTCAAATATTGGTTTAATAAATAAAATATAAAAACCATACTCTACATCAAACTTGTTTTCGAATAAATGTTTTACAATTTTCTCCAATTCACCACTTAAGTATACCTCAATAT  >  USA300TCH1516_ALE/2348193‑2348370                                      |                                                                                                                                             ctATATTCTGATGATTCGATTTTTGTATTGAATTCTTCTTTAACATAGTTAGAAGAAAAAACAATTTCAAATATTGGTTTAATAAATAAAATATAAAAACCATACTCTACATCAAACTTGTTTTCGAATAAATGTTTTACa                                       >  1:40452/1‑141 (MQ=255)                                      cttTAACATAGTTAGAAGAAAAAACAATTTCAAATATTGGTTTAATAAATAAAATATAAAAACCATACTCTACATCAAACTTGTTTTCGAATAAATGTTTTACAATTTTCTCCAATTCACCACTTAAGTATACCTCAatat  <  1:40096/141‑1 (MQ=255)                                      |                                                                                                                                             CTATATTCTGATGATTCGATTTTTGTATTGAATTCTTCTTTAACATAGTTAGAAGAAAAAACAATTTCAAATATTGGTTTAATAAATAAAATATAAAAACCATACTCTACATCAAACTTGTTTTCGAATAAATGTTTTACAATTTTCTCCAATTCACCACTTAAGTATACCTCAATAT  >  USA300TCH1516_ALE/2348193‑2348370

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑