Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2382641	2382677	37	2 [1]	[1] 2	swrC	Swarming motility protein SwrC

AATGTTTCTTAAAAACAGCAAAATAACTATAATTGCCACGATTGTACCTAATGATGCTTTTTCAACCATCGTATAAAGTGATTTCTCAACAGGCTTTGCAGTATCCATTGTTTTTGTGACATTAAAATCTTTATTTTCATCAACGAATGTATCAATTT  >  USA300TCH1516_ALE/2382500‑2382657                                                                                                                                             |                  aaTGTTTCTTAAAAACAGCAAAATAACTATAATTGCCACGATTGTACCTAATGATGCTTTTTCAACCATCGTATAAAGTGATTTCTCAACAGGCTTTGCAGTATCCATTGTTTTTGTGACATTAAAATCTTTATTTtcatc                   <  1:6210/141‑1 (MQ=255)                  gCAAAATAACTATAATTGCCACGATTGTACCTAATGATGCTTTTTCAACCATCGTATAAAGTGATTTCTCAACAGGCTTTGCAGTATCCATTGTTTTTGTGACGTTAAAATCTTTATTTTCATCAACGAATGTATCAAttt  >  1:49783/1‑141 (MQ=255)                                                                                                                                             |                  AATGTTTCTTAAAAACAGCAAAATAACTATAATTGCCACGATTGTACCTAATGATGCTTTTTCAACCATCGTATAAAGTGATTTCTCAACAGGCTTTGCAGTATCCATTGTTTTTGTGACATTAAAATCTTTATTTTCATCAACGAATGTATCAATTT  >  USA300TCH1516_ALE/2382500‑2382657

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑