Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2382641	2382677	37	2 [1]	[1] 2	swrC	Swarming motility protein SwrC

CATCTTTGGCTACTTGAACTGTATTGGCATCTTGAGCTTTAGTTATTTGTAGATTAACCGCATCCTTTCCATTCGTTTTAGAAATAGAAGTACGCACATCACCAACTGTAATATCAGCTAAATCTCCTAGTTTCGCTGTCGGCATACCACTT  >  USA300TCH1516_ALE/2382667‑2382818            |                                                                                                                                             cATCTTTGGCTACTTGAACTGTATTGGCATCTTGAGCTTTAGTTATTTGTAGATTAACCGCATCCTTTCCATTCGTTTTAGAAATAGAAGTACGCACATCACCAACTGTAATATCAGCTAAATCTCCTAGTTTCGCTGTCg             <  1:48318/141‑1 (MQ=255)            aCTTGAACTGTATTGGCATCTTGAGCTTTAGTTATTTGTAGATTAACCGCATCCTTTCCATTCGTTTTAGAAATAGAAGTACGCACATCACCAACTGTAATATCAGCTAAATCTCCTAGTTTCGCTGTCGGCATACCACtt  >  1:2247/1‑141 (MQ=255)            |                                                                                                                                             CATCTTTGGCTACTTGAACTGTATTGGCATCTTGAGCTTTAGTTATTTGTAGATTAACCGCATCCTTTCCATTCGTTTTAGAAATAGAAGTACGCACATCACCAACTGTAATATCAGCTAAATCTCCTAGTTTCGCTGTCGGCATACCACTT  >  USA300TCH1516_ALE/2382667‑2382818

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑